Software

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[ science general ][ editors and text processing ][ office suite ]
[ images, graphics and multimedia ][ sound ][ visualization ]
[ mathematics and numerical computation ][ statistics ][ chart drawing ][ graph drawing ]
[ Macintosh utilities ][ scientific programs ]

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Software installed

Adobe Photoshop
- Photoshop ユーザーガイド
- Photoshopプラグイン50 · 2016年8月23日
Endnote [Claviate ]

Software Links

science general
- Linuxで科学しよう　· by メディアラボ．
- Molecular Linux · by Bioinformatics Organization.
emulation.net･collection of various emulators.
editors and text processing
- 初心者におすすめ！無料HTMLエディター１５選
- Alpha · Macintosh.
- Color-Mate･ mule / emacs / xemacs / xemacs UTF-2000 / Mule for win32 / Meadow をカラー化するキット.
- jEdit･フリーウェアのテキストエディタ
- NuEdit · OS9. 文字の色づけなどができる．
- icWord･ A Mac utility to open MS Word files without Word.
- WriteNow-Latest Info
- Acta · the award-winning outline processor, is available again. Format Driver.
- NewNOTEPAD 「ヒサドニア」ホームページ · OBSOLETE.
- FreePWING Project･ Free EPWING. 辞書作り
- JEDict · multilingual dictionary.
- Le GNU a2ps
- TeX
  - LaTeXコマンドシート一覧
  - TeX Users Group TUG
  - OzTEX
  - plain2 · プレインテキストを LaTeX, ROFF, HTML へ変換するテキストコンバータ. by 内田昭宏.
- FreeMind · マインドマップ
- mindmap.jp · マインドマップ関連情報サイト
- MetaCommnder Home Page · 情報収集エージェント
- MUSASHI · データマイニングツール MUSASHI in マイコミジャーナル・Yet Another 仕事のツール.
- Namazu･全文検索システム.

office suite
- Apache OpenOffice
- LibreOffice
- StarSuite･ by SUN MicroSystems. an MS Office compstible. OBSOLETE
- ThinkFree Office by sourcenext.

images, graphics and multimedia
- ImageMagick
  - ImageMagick Option
  - Linux: ImageMagick Command Line Tutorial
- ImageJ 新 | ImageJ　旧 · in Java. [ ImageJ 日本語情報]
- NIHimage · Macintosh. obsolete.　replaced by ImageJ.
- PixelCat · Macintosh. picture viewer.
- The GIMP Homepage･
- GraphicConverter by Lemke Software.
- GhostScript
- gv · ghostviewのかっこいいもの．
- PSUtils · PostScript utilities.
- UniConvertor · Universal graphics translator by sk1 Project. オープンソースのベクターグラフィックスデータ変換プログラム．
  - macOS version of UniConvertor 2.0
  - macOSにUniconvertor (ver 1.x) をインストールする
  - Uniconverter @inkscape情報サイト．Win版インストールの解説．
- Convert CDR to PDF · online and free. Corel Draw.
- RealPlayer ·
- Kodi · Formerly, XBMC Media Center [@SourceForge.JP]. Linux、Mac、Windows.
- POV-Ray · a ray tracer.

sound
- Retro CD･速度可変型CD player. OS7.5-OS9.

visualization
- AVS
- Khoros by Khoral Research Inc.･
- Visualization Toolkit (VTK)
  - Kitware, Inc.
  - public.kitware.com
  - vtk in fujim2 Wiki.
- 年末年始の工作に最適？1万円以下で3Dスキャナーを作っちゃう方法
- 3DScan · 3d from 2d pictures-- automatic 3D digitizing software
- Gulliver Media Australia･ provides free-use pics and streaming videos.
- VRML models･
- STRATA 3D CX [ STRATA 3D CX チュートリアル ][ Strata Cafe ]
mathematics and numerical computation
- mc･ Matrix Calulator
- Scilab · less MATLAB compatible. includes GUI.
  - Scilab　日本語ページ
  - Scilab マニュアル · マニュアルと入門．
  - Scilabユーザーグループ in Japan
- Octave · mostly MATLAB compatible. .app and fink versions available for OS-X.
  - GNU Octave Repository at SourceForge.
  - GNU Octave 2.1.x 日本語マニュアル
  - Octave入門
  - Octave-Forge · Extra packages for GNU Octave
  - SciLab & Octave 数式処理・グラフ処理ソフト on MacOS X 10.2
- Maxima ·
  - Maxima Manual･翻訳中．
  - Maximaで遊ぼう
- Mathematica
  - MathWorld･

statistics
- R
  - CRAN - The Comprehensive R Archive Network (japan mirror)
  - RjpWiki
  - R-Tips ·
  - R による統計処理
  - R でプログラミング
  - EXCEL のデータを読み込む
  - Rでのバイナリデータの読み方
- おしゃべりな部屋 · by Shigenobu AOKI.　統計学の話題．Excel．
- MacStats･ the Macintosh statistical software clearinghouse.
- curvefit.com by GraphPad Software. A complete guide to non-linear regression.

chart drawing
- gnuplot
  - gnuplotコマンド集 · 検索がない!
  - グラフは Gnuplot にお任せ
  - gnuplot - not so FAQ · 日本語．　
  - gnuplot のページ (Takeno Lab) [ 日本語訳マニュアル ]
- Grace · a WYSIWYG 2D plotting tool for the X Window System and M*tif. Grace User's Guide.
- MathPad is a general purpose graphing scientific calculator for the Macintosh.
- Mgraph･ is 2D graphic software. Motif.
- PovGraph (2.5) ? PovGraph is a tool for rendering 3D mathematical function charts using Povray 2.2.

graph drawing
- uDraw(Graph)-- For creating graphs, flow charts, diagrams, hierarchies or structure visualizations using automatic layout.
- VCG tool -- Visualization of Compiler Graphs. Not a graph editor but automatically generates large graphs.
- Graph Drawing Tools and Related Works･ Collection of works related to the VCG tool.
CAP - Columbia AppleTalk Package. このサイトより現在も入手可能･
netatalk
Macintosh utilities
- Project AppleSeed-- Personal Parallel Computing.
- BeHierarchic･ OS9. Apple Menuの2階層以降の表示にもアイコンを表示させる ftp site in Japan･
- ComNiftyの情報･
- Default Folder･ Macintosh. registered.
- DataRescue･ Macintosh. Prosoft engineering.
- DiskFolder･OS8.5 Hit-C Soft House
- DMCP･ OS9. MacでDOS形式の3.5"MOやZIPを読む．
- DragThing･
- Eudora-J : Eudora-J ミニＱ＆Ａ · 中田了さんのホームページ ·
- Eudoraの日本語マニュアル ( WWW) (Eudora-J1.3.3J7.doc.sea.hqx)
- File Buddy
- MI/X･ A Professional, Free, X Server for Windows and Macintosh by MicroImages.
- NewsWatcher-J (PPC)
- PowerFPU ·
- Synchronize! by Qdea. for Macintosh
VMSBACKUP · VMSのBACKUPでつくったデータをunixで読む． Jim Kingdon's VMSBACKUP page
scientific programs
- Antheprot　･ ANalyze THE PROTeins. by Dr.Deleage. For Windows. 蛋白質アミノ酸配列の解析．疎水性度など．
- Open Bebel･ a chemical toolbox designed to speak the many languages of chemical data, including SDF/MOL, Sybyl mol2, PDB, SHELX, SMILES, XYZ, CML...
- calcon･Ｃａバッファー濃度計算プログラム･
- loopDloop･ in Java. an application for visualizing RNA secondary structure
- pdb2VRML onverts molecular structure information stored in a Brookhaven Protein Database file (.pdb) into a VRML world file (.wrl).
- XRayView･ A Virtual X-Ray Crystallography Laboratory
- Metal Search･ v1.0 searches the backbone coordinates of a protein structure to find sets of four residues that can be replaced by Cys or His, as appropriate, to form a potential tetrahedral zinc binding site.
  Refs: Regan and Clarke (1990). A tetrahedral Zn(II)-binding site introduced into a designed protein. Biochemistry 29, 10878-10883; Klemba,et al (1995) Novel metal-binding proteins by design. Nature: Structural Biology 2 368-373 ; Clarke and Yuan. (1995) Metal Search: A computer program that helps design tetrahedral metal binding sites. Proteins in press)
- ORTEP-III･ The Oak Ridge Thermal Ellipsoid Plot. For drawing Ball-and-stick type illustrations with either spheres or thermal-motion probability ellipsoids
- POVCHEM? PDB files -> POVRAY
- Primer for IBM-PC･ＰＣＲの際のPrimerを設計するのに.
- ProFit -- protein least-squares fitting software. by Andrew C.R. Martin's Bioinformatics Group at UCL.
- Readseq･ a Java program to read & reformat biosequences.
- SeqPup-- is a biological sequence editor and analysis program. Java. Macintosh, MS-Windows and X-Windows.
- QTree-- for generating CPK, Ball and Stick and worms pictures of molecules using the quad-tree algorithm. by Andrew C.R. Martin's Bioinformatics Group at UCL.
- PowderCell -- for manipulation and visualisation of crystal structures and its bonding relations as well as for the calculation of the corresponding powder diffraction traces of polycrystalline samples.
- CrystalDesigner 6.0b2･･a tool for building, studying and visualising all kinds of crystal structure on the Macintosh platform.
- k_Space Navigator･ commercial software for TEM. for Windows.

Obsolete

Alchemy
Alliance Power Tools 2.7.3 ,ASP.sit.hqx ･ハードディスクのパーティションを切る
Apple IP Gateway 1.0から1.0.1へのpatch･ % Apple IP Gateway and Open Transport
Apple IP Gateway 1.0.1 cannot be installed or executed on a machine running Open Transport.
AppleTalk Packages
CD to AIFF･ cd-to-aiff-12c.hqx
Cinemania･ by MicroSoft .
Client-Side CGI software ･ for Power Macintosh and Windows 95. Free.
CU-SeeMe 0.85b1
EasyView･ Macintosh
eNWS · netnews reader for Macintosh. http://www.st.rim.or.jp/~suemasa/eNWS.html
Expect･ ftp://ftp.cme.nist.gov/pub/expect/
FreePPP･ http://www.rockstar.com/webfiles/
ISOnoHFS･ DOS formatのCD-ROMをMacで読む．(info-mac/disk).CD-ROMのISO9660側も見えるようにする．
iView･写真管理ツール，Mac. iView Multimedia has been acquired by MicroSoft. OBSOLETE?
JPEGView
LinuxDisks･ read/write Linux file systems from MacOS.
Lynx･テキストＷＷＷブラウザ.
MacLoad･ UMICH. xloadに似たCPUの負荷を表示するソフト･
macPPP timer: macppptimer1.45.sit.hqx
MacProxy+0.9.5b
Mac's Talkin' Dictionary v2.2
MacWavelets･ an inexpensive, simple, standalone, Macintosh program for performing 1d and 2d discrete wavelet transforms and associated analyses. With Links to Additional Wavelets Resources.
MathLibMoto
MozKiller & MozHunter by uchino.com･
MPEG Exporter by Astarte ･MoviePlayer等でQTからMPEGへの変換を可能にする
Nasukeeper Pro @せきまことさんのページ
NEC Floppy Patch (SWIM3機能拡張　1.0f1)･ NEC_Floppy_Patch.sea.hqx. Power Macintoshシリーズに 2HD 256 byte/sector フォーマットのメディアを挿入すると上記ダイアロ?Oが現れるまでに特に長い時間(1分～3分)を要することがあります。SWIM3機能拡張?tァイルを使用することで、この場合の認識速度を向上させることができます。･
NetPresenz: http://www.stairways.com.au/
NextTrain
NewsHopper 1.2 (http://www.demon.co.uk/sw15:SW15)(http://ux01.so-net.or.jp/~takizawa/: tennis pal and NewsHopper Info)(http://www.toyomura.com/:トヨムラ)
NewsWatcher-J16: ftp://ftp.taiiku.tsukuba.ac.jp/pub/newswatcher/
Pan-Asia Language Kit and Unicorn Editor ･$20. contains CJK script and font to enable any Macintosh 7.5+ to read Chinese/Japanese/Korean in any applications. http://www.concentric.net/~tsunmei/shareware/Unicorn.shtml
Photo O Matic･ Photoshopの中の複数の作業履歴をtextベースの文書によって保存する. http://www.daystar.com/DayStarHome.html
PocketCites･ for using EndNote data on PalmOS. By Wooden Brain Concepts.
Printer Defaults 1.4.3 · LaserWriter 8のdefault paper sizeをかえる. printer-defaults-143.hqx
ps-print-jp.el･ for xemacs.
PSPrinter · by Adobe.
Reference Web Poster･ makes EndNote files accessible over the web.
Reliever · PowerMacネイティブのFontPacnin' と InlineTSM+相当のプログラム･
ResEdit
Sound Player -- /info-mac/gst/snd/snd-player-23.hqx. 複数の AIFF file の連続再生．
touchMe -- は，Macintoshのファイルやフォルダの日付(作成日と修正日)を変更するためのアプリケーションプログラム．Unixのtouchコマンドのようなもの．
video-for-windows-11p -- in info-mac
Virtual -- virtual desktop utility for Mac･
VISU -- gray-scale widget for Tcl/Tk (UNIX only)
VTX for Macintosh
Wnn for Macintosh･ by イニューシステム．販売終了．
dvipsk-5.58f J1.0 p1.1 を MacOS に移植したもの
SONY SMD-341M，SONY SMD-344MのARA設定ファイル･
yabuno95･マック用の医化学専門の日本語変換辞書．